SLiMSearch 3

Description

SLiMSearch searches for occurrences of pre-defined motifs in protein sequences. SLiMSearch uses sequence context in terms of structural disorder and evolutionary conservation to mask input proteins and/or rank motif occurrences. Read more ...

Pages:

  • Download : slimsuite home | zip
  • Help : quick start | manual | Mailing List
  • Examples : output
  • View job


    News:

    Welcome to SLiMSearch 3. SLiMSearch 2 server will no longer be updated and has been restricted to core functionality, it will remain active as a legacy server here.

    Major changes.
    • New search database. Orthologue alignments are now made using the Quest for Orthologues standard dataset
    Minor changes.
    • Added new probabilistic conservation metrics
    • Added new motif conservation range information
    • Added new species range information


    Publications:

    SLiMSearch 2.0: biological context for short linear motifs in proteins

    Click here for a full list of Publications



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    Norman Davey(2009-2012)