SLiMSearch 1.5

Description

SLiMSearch searches for occurrences of pre-defined motifs in protein sequences. SLiMSearch uses sequence context in terms of structural disorder and evolutionary conservation to mask input proteins and/or rank motif occurrences. Read more ...

Pages:

  • Download : slimsuite home | zip
  • Help : quick start | manual | Mailing List
  • Examples : plain/annotated input | output
  • View job


    Publications:

    The SLiMSearch publication is currently in preparation.

    Davey, Norman E., Haslam, Niall J., Shields, Denis C. and Edwards, Richard J. (2010): SLiMSearch: a webserver for finding novel occurrences of short linear motifs in proteins, incorporating sequence context. Pattern Recognition in Bioinformatics.

    Talks:

    Pattern Recognition in Bioinformatics 2010

    Click here for full list of References and Citations

    Step 1: Choose a search database

    Load sequence from UniProt


    (Load example|Clear example)


    Analyses are limited to 100 proteins.
    For larger custom datasets, download SLiMSearch here.

    or
    Choose from a predefined database.


          All proteins
          Cytoplasmic proteins only
          Nuclear proteins only
          Membrane proteins only

          Server Test Dataset

    or
    Load sequences from GO


    (Load example|Clear example)