SLiMFinder @ Bioware

SLiMFinder is a method to find shared motifs in proteins with a common attribute such as sub-cellular location or a common interaction partner. Read more ...

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Input options

Please enter UniProt IDs here.
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Basic options

Mask out ordered residues

Mask out unconserved residues

Advanced options

Mask out the N-terminal M

Minimum disordered length for inclusion

Mask out low complexity regions

Mask out position specific residues

Mask out these amino acids example
Motif Search options

Min. #. consecutive wildcards

Max. #. consecutive wildcards

Max. # wildcards

Min. # unrelated seqs with motif

BLAST options

Blast expectation (E) value
Ambiguity options

List of residue ambiguities to use

Find ambiguity

Special options

Allow variable length wildcards
Significance cut off for returning results

Probabilities based on residue frequencies after masking
Only return max. this no. of motifs

Min. information content of motifs

Motifs must include one or more of these residues example

Motifs must occur in these sequences example

Analyses are limited to 50 sequences and 20 UPCs. For larger datasets please download standalone version here.


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