SLiMFinder @ Bioware

SLiMFinder is a method to find shared motifs in proteins with a common attribute such as sub-cellular location or a common interaction partner.

The Bioware's Slimfinder server is out of date. we recomment to use the REST server hosted by the EdwardsLab at UNSW http://www.slimsuite.unsw.edu.au/servers.php.

under the "Run REST server job" area enter slimfinder in the "Prog:" box and enter sequence UNIPROT accessions IDs and options in the options box

e.g.
slimfinder uniprotid=Q90372,Q14108,P11344&dismask=T

Disorder masking (dismask=T) is very strongly recommended. Other options are also available and described under the SLIMBuild and SLiMChance tabs of the documentation (http://rest.slimsuite.unsw.edu.au/slimfinder)