SLiMFinder 4.1

Description

SLiMFinder is a method to find shared motifs in proteins with a common attribute such as sub-cellular location or a common interaction partner. Read more ...

Pages:

  • Download : slimsuite home|zip
  • Help : quick start|manual
  • Contact : mailing list
  • Examples : input|output
    • View job


    Publications:

    SLiMFinder: a web server to find novel, significantly over-represented, short protein motifs.

    Edwards RJ, Davey NE & Shields DC (2007): SLiMFinder: A probabilistic method for identifying over-represented, convergently evolved, short linear motifs in proteins. PLoS ONE 2(10): e967.

    Click here for full list of References and Citations

    UniProt (Full Functionality)

    Load Sequences

    Please enter UniProt IDs here to load protein data.

    (Load example|Clear example)

    Analyses are limited to 50 sequences and 20 UPCs. For larger datasets please download standalone version here.

    Relative Local Conservation (RLC) masking ( Davey et al. 2009) is currently only available for datasets of UniProt proteins. Paste a list of UniProt IDs and/or accession numbers into the text box and click "Get sequences" to proceed to the Options page.

    Click here to upload your own sequences for analysis without conservation masking.

    Upload Sequences

    Click here to upload your own sequences for analysis without conservation masking.