SLiMDisc

Description

SLiMDisc (Short Linear Motif Discovery) is a method to find shared motifs in proteins with a common attribute such as sub-cellular location or a common interaction partner. Read more ...

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Publications:

SLiMDisc: short, linear motif discovery, correcting for common evolutionary descent
Norman E. Davey, Denis C. Shields and Richard J. Edwards
Nucleic Acids Research 2006 34(12):3546-3554

Click here for full list of References and Citations

Input options

Protein sequence input file
Enter 3+ protein sequences (max 10000 characters)
Advanced options
SLiMDisc options

Use ambiguity
Query protein (No ".","/","\" allowed in identifiers)
No of outputted motifs
Gap weight
E-value cut-off
Evolutionary filtering
Filtering
Normalisation typeTEIRESIAS optionsCut-offs
MST
UHS
UP
Fixed Positions (2+)
Motif length
Support String (3+)
Complexity cut-off
Information content cut-off
Surface accessibility cut-off
Alignment options

Select colours for motif alignments

A
R
N
D
C
Q
E
G
H
I
L
K
M
F
P
S
T
W
Y
V
B
Z
X