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1. Check if the input file is in the right format. To see the format of a sample file , Please click here
2. Make sure your input file is in a tab delimited format.(.tdt)
3. Check if the columns that you have in your input file has the entry names or the uniprot accession numbers and the peptide sequences.
YOU GET AN OUTPUT BUT WITH NO CONTENT
Please make sure that your fasta sequence is limited to 1400 characters. If the sequence is too long, you can use xpdf software to view such large files.